![]() (potential) proteins operating in a selected pathway. Proteins with the selected PTM and show the modified peptides. Proteomics publications and the protein accessions identified. Extract proteinsīased on their curated location in the cell. Particular comparative proteomics experiments. Search Comparative Proteomics experiments. Source by species, organ, cell type or subcellular fraction. Information can all be extracted from the PPDB for individual ![]() How to extract information from PPDB? The PPDB has nine searchįunctions to extract multiple types of information (output) stored in PPDB forĪny accession, by simply choosing a search function and selecting the relevant For individual protein searches, this is the best way to obtain Information about matched mass spectrometry data and how it maps to the A few otherĭatabases are hyperlinked for each accession to obtain additional informationįor this protein accession. That summarizes all information for that protein stored in PPDB. Proteomics papers are cross-referenced to rapidly determine previousĮxperimental identification by mass spectrometry. Identified in published Arabidopsis (and other Brassicacea) (intra) plastid location and their plastid function. Importantly, proteins are particularly curated for possible What information is stored in PPDB? The PPDB storesĮxperimental data from in-house proteome and mass spectrometry analysis,Ĭurated information about protein function, protein properties and subcellular ![]() Information (even if not experimentally identified). Thus every predicted protein in both species can be searched for experimental and other These are all uploaded in PPDB and are linked to each Maize and rice, as assembled respectively in, Īnd, supplemented with plastid and mitochondrial genomes. Which proteins can be searched? All protein-encoding gene models in the Arabidopsis, Was renamed from Plastid PDB to Plant PDB in November 2007. To plant plastids, but has now expanded to the whole plant proteome – hence it What is PPDB? PPDB is a Plant Proteome DataBase for Arabidopsis
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